PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2427_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WOX
Protein Properties Length: 360aa    MW: 39753.4 Da    PI: 8.9516
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2427_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.39.5e-0746653857
                TS-HHHHHHHHHHHHHHHHC CS
    Homeobox 38 gLterqVkvWFqNrRakekk 57
                ++ +++V++WFqNr+ + k+
  RrC2427_p1 46 QVGDANVFYWFQNRKSRSKH 65
                67799************995 PP

2Wus_type_Homeobox44.44.1e-1541663964
  Wus_type_Homeobox 39 LeeyGkiedkNVfyWFQNrkaRerqk 64
                        +eyG+++d+NVfyWFQNrk+R+++k
         RrC2427_p1 41 FSEYGQVGDANVFYWFQNRKSRSKHK 66
                       689*********************99 PP

Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPHHHQ WQHDINSPLL PSPASHRSSP FSEYGQVGDA NVFYWFQNRK  60
SRSKHKLRLL HNHSKHSLPP PQPQPQPQPI SSASSSSSSS SSSSKSTKPR KSKNKNNNNN  120
NNNTNLSLGG SQMMGMFPPE ASFLFPTSSV GGFEGIPVSS QLGFFPGDMI EQPKQTPPTV  180
GPCTGILLSE IMNASAGYET HNHQQSGEKE DEVKMLQQQQ PQICYAATSD QINSYNNINN  240
NIMLHVPPTT STTTTSNPLA IVPSTLDQLQ VQAAGARIRV FINEMEFEVS PGQFNVRDAF  300
GEEVVLINSA GQPIVTDEYG VAIHPLQHGA SYYLVLSSRV GDLGLKMKLR HVSFFHYLSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013646803.11e-167PREDICTED: WUSCHEL-related homeobox 9-like
RefseqXP_009143822.11e-167PREDICTED: WUSCHEL-related homeobox 9
SwissprotQ6X7J41e-137WOX9_ARATH; WUSCHEL-related homeobox 9
TrEMBLA0A078FWA31e-168A0A078FWA3_BRANA; BnaA05g09770D protein
TrEMBLM4CMM61e-168M4CMM6_BRARP; Uncharacterized protein
STRINGBra005464.1-P1e-167(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72062640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-121homeobox-3